Gene

gypc

ID

ZDB-GENE-030131-7930

Name

glycophorin C (Gerbich blood group)

Symbol

gypc Nomenclature History

Previous Names

fj41h10
wu:fj41h10

Type

protein_coding_gene

Location

Chr: 9 Mapping Details/Browsers

Description

Localizes to extrinsic component of plasma membrane. Human ortholog(s) of this gene implicated in malaria. Is expressed in nucleate erythrocyte. Orthologous to human GYPC (glycophorin C (Gerbich blood group)).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Nunomura et al., 2007

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With gypc Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
		[Blood group, Gerbich]	616089
		{Malaria, resistance to}	611162

Associated With gypc Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003585	Neurexin/syndecan/glycophorin C
Family	IPR042192	Glycophorin-C

Domain Details Per Protein

Protein	Length	Glycophorin-C	Neurexin/syndecan/glycophorin C
UniProtKB:Q6XFR2 InterPro	89

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	gypc-201 (1) Ensembl	Ensembl		1,451 nt	Select Tool
mRNA	gypc-202 (1) Ensembl	Ensembl		249 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-gypc	polyclonal	gypc		Rabbit	IHC WB		1

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations